I work in a multinational e-commerce company where part of my compensation package is stocks. I am certain that the job that I do is halal, however, what is the ruling on the stocks that I receive? Because the company as a whole might deal with interest.

If you mean that they put their money in the bank and it has interest, the fatwa of our sheikhs is that it is allowed. Keep in mind being paid in money and stocks at the same time, this issue, there is a difference between the people of ilm in regards to whether it is allowed or not. And as i said the fatwa of our sheikhs is that it is allowed and Allah knows best.